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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_035287
Query referenceOH1004
LocationChr08:19257370-19259094 (-)
DescriptionSimilar to ARR12: Two-component response regulator ARR12 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035287 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 31 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25180 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.
The rate of cell differentiation controls the Arabidopsis root meristem growth phase.2010 · DOI: 10.1016/j.cub.2010.05.035
At3g16857 Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.
Two-component circuitry in Arabidopsis cytokinin signal transduction.2001 · DOI: 10.1038/35096500
ARR1, a transcription factor for genes immediately responsive to cytokinins.2001 · DOI: 10.1126/science.1065201
A genetic framework for the control of cell division and differentiation in the root meristem.2008 · DOI: 10.1126/science.1164147
At3g46640 Transcription factor that is essential for the generation of the circadian clock oscillation.
PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.2005 · DOI: 10.1111/j.1365-2443.2005.00892.x
LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock.2011 · DOI: 10.1016/j.cub.2010.12.021
At5g59570 Transcription factor that is a critical component of the regulatory circuit of the circadian clock. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0182100 Transcriptional activator that binds specific DNA sequence. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000122negative regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000160phosphorelay signal transduction systemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=28.871; evalue=8.67e-19; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007623circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009735response to cytokininBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009736cytokinin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009909regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=18.898; evalue=6.5e-19; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010082regulation of root meristem growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IMP:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010380regulation of chlorophyll biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010492maintenance of shoot apical meristem identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031537regulation of anthocyanin metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042752regulation of circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042753positive regulation of circadian rhythmBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048367shoot system developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071368cellular response to cytokinin stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080022primary root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080036regulation of cytokinin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IMP:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080113regulation of seed growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090506axillary shoot meristem initiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.564; coverage=20.472; evalue=1.67e-19; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.564; coverage=20.472; evalue=1.67e-19; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.564; coverage=20.472; evalue=1.67e-19; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000156phosphorelay response regulator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.564; coverage=20.472; evalue=1.67e-19; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G25180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.721; coverage=45.144; evalue=7.54e-20UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G16857KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.564; coverage=20.472; evalue=1.67e-19UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G46640KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.393; coverage=29.396; evalue=3.97e-19UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G59570KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.0; coverage=18.898; evalue=6.5e-19UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0182100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=28.871; evalue=8.67e-19UniProtKB/Swiss-Prot DAT 2026 current_release