Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_034249 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:93211234-93215245 (+) |
| Description | Similar to SPHK2: Sphingosine kinase 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_034249 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 66 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g21534 |
Involved in the production of sphingolipid metabolites. | |
At4g21540 |
Involved in the production of sphingolipid metabolites. |
Involvement of sphingosine kinase in plant cell signalling.2008 · DOI: 10.1111/j.1365-313x.2008.03579.x
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001934 | positive regulation of protein phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IMP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006473 | protein acetylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006665 | sphingolipid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006670 | sphingosine metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009267 | cellular response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.197; coverage=99.789; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010803 | regulation of tumor necrosis factor-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0014075 | response to amine | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016310 | phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019722 | calcium-mediated signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030100 | regulation of endocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030148 | sphingolipid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030307 | positive regulation of cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030335 | positive regulation of cell migration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031398 | positive regulation of protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032026 | response to magnesium ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032570 | response to progesterone | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032651 | regulation of interleukin-1 beta production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032740 | positive regulation of interleukin-17 production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033198 | response to ATP | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034612 | response to tumor necrosis factor | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035556 | intracellular signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035924 | cellular response to vascular endothelial growth factor stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045840 | positive regulation of mitotic nuclear division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045931 | positive regulation of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045987 | positive regulation of smooth muscle contraction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046512 | sphingosine biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046521 | sphingoid catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048146 | positive regulation of fibroblast proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050764 | regulation of phagocytosis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070301 | cellular response to hydrogen peroxide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070555 | response to interleukin-1 | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071215 | cellular response to abscisic acid stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071363 | cellular response to growth factor stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071897 | DNA biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090520 | sphingolipid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900060 | negative regulation of ceramide biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900745 | positive regulation of p38MAPK cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901224 | positive regulation of non-canonical NF-kappaB signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905364 | regulation of endosomal vesicle fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.197; coverage=99.789; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.197; coverage=99.789; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005905 | clathrin-coated pit | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005929 | cilium | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.595; coverage=74.473; evalue=3.66e-40; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.197; coverage=99.789; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009705 | plant-type vacuole membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030139 | endocytic vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031901 | early endosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035869 | ciliary transition zone | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.595; coverage=74.473; evalue=3.66e-40; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000287 | magnesium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001727 | lipid kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005516 | calmodulin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008289 | lipid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008481 | sphingosine kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016407 | acetyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0038036 | sphingosine-1-phosphate receptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051721 | protein phosphatase 2A binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42; UniProt GO evidence=IPI:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070300 | phosphatidic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G21534 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.529; coverage=98.523; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G21540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.197; coverage=99.789; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:8877 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.102; coverage=74.262; evalue=2.13e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:20698 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.595; coverage=74.473; evalue=3.66e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:170897 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.259; coverage=73.207; evalue=2.77e-40 | UniProtKB/Swiss-Prot DAT 2026 current_release |