Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_033431`
Query reference	OH1004
Location	Chr07:43807980-43809757 (+)
Description	Similar to POSF21: Probable transcription factor PosF21 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_033431 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 24 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g31370`	Putative transcription factor with an activatory role.	No verified direct reference in this release
`At2g40620`	Transcription factor that may participate with bZIP34 in the gametophytic control of pollen development.	Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.2017 · DOI: 10.1007/s00497-016-0295-5
`At1g43700`	Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3.	Isolation and characterization of low-sulphur-tolerant mutants of Arabidopsis.2010 · DOI: 10.1093/jxb/erq161

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0516200`	Transcription factor probably involved in vascular development and shoot tissue organization.	Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants.2001 · DOI: 10.1073/pnas.121186398 Functional analysis of RF2a, a rice transcription factor.2003 · DOI: 10.1074/jbc.m304862200 RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease.2004 · DOI: 10.1073/pnas.0307687100 RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development.1997 · DOI: 10.1093/emboj/16.17.5247
`Os03g0336200`	Transcription factor probably involved in vascular development and shoot tissue organization.	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease.2004 · DOI: 10.1073/pnas.0307687100

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=IDA:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007231	osmosensory signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009294	DNA-mediated transformation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009652	thigmotropism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009970	cellular response to sulfate starvation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045596	negative regulation of cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051170	import into nucleus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902358	sulfate transmembrane transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.188; coverage=61.282; evalue=3.15e-47; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048471	perinuclear region of cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.188; coverage=61.282; evalue=3.15e-47; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003676	nucleic acid binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.709; coverage=72.308; evalue=1.77e-71; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031490	chromatin DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.188; coverage=61.282; evalue=3.15e-47; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051019	mitogen-activated protein kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G43700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.697; coverage=42.308; evalue=4.79e-41	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G31370	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.828; coverage=83.59; evalue=1.86e-103	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G40620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.188; coverage=61.282; evalue=3.15e-47	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0336200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.852; coverage=58.718; evalue=6.76e-48	UniProtKB/Swiss-Prot DAT 2026 current_release