Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_032813`
Query reference	OH1004
Location	Chr07:29687196-29695045 (+)
Description	Similar to CLV2: Receptor-like protein CLAVATA2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032813 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65380`	Involved in the perception of CLV3 and CLV3-like (CLE) peptides, that act as extracellular signals regulating meristems maintenance.	The Arabidopsis CLAVATA2 gene encodes a receptor-like protein required for the stability of the CLAVATA1 receptor-like kinase.1999 · DOI: 10.1105/tpc.11.10.1925 The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway.2005 · DOI: 10.1105/tpc.105.034009 Functional analyses of the CLAVATA2-like proteins and their domains that contribute to CLAVATA2 specificity.2010 · DOI: 10.1104/pp.109.148197 Stem cell signaling in Arabidopsis requires CRN to localize CLV2 to the plasma membrane.2010 · DOI: 10.1104/pp.109.149930 CLE14/CLE20 peptides may interact with CLAVATA2/CORYNE receptor-like kinases to irreversibly inhibit cell division in the root meristem of Arabidopsis.2010 · DOI: 10.1007/s00425-010-1236-4 Nematode CLE signaling in Arabidopsis requires CLAVATA2 and CORYNE.2011 · DOI: 10.1111/j.1365-313x.2010.04433.x Mechanisms of molecular mimicry of plant CLE peptide ligands by the parasitic nematode Globodera rostochiensis.2011 · DOI: 10.1104/pp.111.180554 Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.2017 · DOI: 10.15252/embr.201643535 CLAVATA2, a regulator of meristem and organ development in Arabidopsis.1998 · DOI: 10.1242/dev.125.19.3843
`At1g08590`	Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.	No verified direct reference in this release
`At4g36180`	Probable LRR receptor-like serine/threonine-protein kinase At4g36180.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0576900`	Functions in the early stages of organ development by regulating cell division rate.	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04877.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0007165	signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009653	anatomical structure morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009742	brassinosteroid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.043; coverage=65.652; evalue=9.04e-83; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.237; coverage=39.676; evalue=1.04e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010075	regulation of meristem growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010078	maintenance of root meristem identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010088	phloem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.237; coverage=39.676; evalue=1.04e-124; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040008	regulation of growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045595	regulation of cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048507	meristem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048509	regulation of meristem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.237; coverage=39.676; evalue=1.04e-124; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090696	post-embryonic plant organ development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.043; coverage=65.652; evalue=9.04e-83; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001653	peptide receptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004672	protein kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.043; coverage=65.652; evalue=9.04e-83; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.043; coverage=65.652; evalue=9.04e-83; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0038023	signaling receptor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G65380	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.976; coverage=58.516; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0576900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.043; coverage=65.652; evalue=9.04e-83	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4336741	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.043; coverage=65.652; evalue=9.04e-83	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:542675	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.237; coverage=39.676; evalue=1.04e-124	UniProtKB/Swiss-Prot DAT 2026 current_release