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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_032669
Query referenceOH1004
LocationChr07:27533610-27536159 (+)
DescriptionSimilar to MOM1: Helicase protein MOM1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032669 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 50 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08060 Together with PIAL1 and PIAL2, regulates transcriptional gene silencing (TGS) independently of changes in DNA methylation.
Two regulatory levels of transcriptional gene silencing in Arabidopsis.2002 · DOI: 10.1073/pnas.202380499
Two means of transcriptional reactivation within heterochromatin.2003 · DOI: 10.1046/j.1365-313x.2003.01667.x
Epigenetic regulation of transcription in intermediate heterochromatin.2006 · DOI: 10.1038/sj.embor.7400835
MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis.2006 · DOI: 10.1038/sj.embor.7400791
Divergent evolution of CHD3 proteins resulted in MOM1 refining epigenetic control in vascular plants.2008 · DOI: 10.1371/journal.pgen.1000165
MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing.2010 · DOI: 10.1038/emboj.2009.328
Locus-specific dependency of endogenous silent loci on MOM1 and non-CG methylation in Arabidopsis thaliana.2010 · DOI: 10.4161/psb.5.6.11663
MORPHEUS' MOLECULE1 is required to prevent aberrant RNA transcriptional read-through in Arabidopsis.2010 · DOI: 10.1104/pp.110.162131
Transcriptional silencing induced by Arabidopsis T-DNA mutants is associated with 35S promoter siRNAs and requires genes involved in siRNA-mediated chromatin silencing.2010 · DOI: 10.1111/j.1365-313x.2010.04358.x
Structural basis of transcriptional gene silencing mediated by Arabidopsis MOM1.2012 · DOI: 10.1371/journal.pgen.1002484
The SUMO E3 Ligase-Like Proteins PIAL1 and PIAL2 Interact with MOM1 and Form a Novel Complex Required for Transcriptional Silencing.2016 · DOI: 10.1105/tpc.15.00997
At5g44800 Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000122negative regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007051spindle organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007098centrosome cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IMP:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031047regulatory ncRNA-mediated gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031507heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042659regulation of cell fate specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045814negative regulation of gene expression, epigeneticBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IMP:HGNC-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0060966regulation of gene silencing by regulatory ncRNABiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000177regulation of neural precursor cell proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.97; coverage=36.011; evalue=2.37e-25; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000736regulation of stem cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005813centrosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.743; coverage=39.625; evalue=6.6e-26; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016581NuRD complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016589NURF complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042735endosperm protein bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.743; coverage=39.625; evalue=6.6e-26; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090537CERF complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IDA:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904949ATPase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.97; coverage=36.011; evalue=2.37e-25; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004386helicase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031491nucleosome bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032183SUMO bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036310ATP-dependent DNA/DNA annealing activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042393histone bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00515372 iron, 2 sulfur cluster bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061629RNA polymerase II-specific DNA-binding transcription factor bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IPI:ParkinsonsUK-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140658ATP-dependent chromatin remodeler activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140750nucleosome array spacer activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G08060KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=36.79; coverage=54.217; evalue=1.61e-52UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G44800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.743; coverage=39.625; evalue=6.6e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:1107KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.955; coverage=35.609; evalue=5.33e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:6594KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.97; coverage=36.011; evalue=6.94e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:93761KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.97; coverage=36.011; evalue=2.37e-25UniProtKB/Swiss-Prot DAT 2026 current_release