Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_030337`
Query reference	OH1004
Location	Chr06:114497755-114498909 (+)
Description	Similar to At5g43190: F-box/kelch-repeat protein At5g43190 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030337 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43190`	F-box/kelch-repeat protein At5g43190.	No verified direct reference in this release
`At5g15710`	F-box/kelch-repeat protein At5g15710.	No verified direct reference in this release
`At1g27340`	F-box only protein 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0665400`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice.2005 · DOI: 10.1016/j.ydbio.2005.03.016 Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate.2007 · DOI: 10.1111/j.1365-313x.2007.03200.x Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence form through control of cell proliferation in the meristem.2009 · DOI: 10.1104/pp.109.136739 A gene controlling the number of primary rachis branches also controls the vascular bundle formation and hence is responsible to increase the harvest index and grain yield in rice.2010 · DOI: 10.1007/s00122-009-1218-8 New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield.2010 · DOI: 10.1038/ncomms1132 ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1.2012 · DOI: 10.1111/j.1365-313x.2011.04781.x Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.2014 · DOI: 10.1093/mp/ssu131 Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.2015 · DOI: 10.1371/journal.pone.0123308
`UniProt: B8B183`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.644; coverage=99.479; evalue=1.12e-105; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010074	maintenance of meristem identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010087	phloem or xylem histogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010193	response to ozone	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010305	leaf vascular tissue pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=83.073; evalue=4.81e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010928	regulation of auxin mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=83.073; evalue=4.81e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.644; coverage=99.479; evalue=1.12e-105; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042127	regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0060776	simple leaf morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=83.073; evalue=4.81e-17; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000151	ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.34; coverage=88.802; evalue=5.04e-21; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=83.073; evalue=4.81e-17; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.644; coverage=99.479; evalue=1.12e-105; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G27340	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.138; coverage=83.073; evalue=4.81e-17	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G15710	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.34; coverage=88.802; evalue=5.04e-21	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G43190	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.644; coverage=99.479; evalue=1.12e-105	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:107277138	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.989; coverage=96.615; evalue=2.21e-14	UniProtKB/Swiss-Prot DAT 2026 current_release