Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_030202 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:110648668-110651376 (+) |
| Description | Similar to RGTA1: Geranylgeranyl transferase type-2 subunit alpha 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_030202 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g24490 |
May catalyze geranylgeranylation of Rab proteins. | |
At5g41820 |
Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of Rab proteins with the C-terminal sequence -CCXX, CXXX, -XCCX and -XCXC, such as RABA1A, RABA2A, RABF2A and RABG2 (By similarity). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0018344 | protein geranylgeranylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036211 | protein modification process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.738; coverage=88.791; evalue=1.46e-51; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.78; coverage=107.375; evalue=1.82e-174; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.738; coverage=88.791; evalue=1.46e-51; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.738; coverage=88.791; evalue=1.46e-51; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005968 | Rab-protein geranylgeranyltransferase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004663 | Rab geranylgeranyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.707; coverage=92.625; evalue=2.9e-52; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031267 | small GTPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.707; coverage=92.625; evalue=2.9e-52; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G24490 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.502; coverage=103.687; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G41820 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.78; coverage=107.375; evalue=1.82e-174 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:5875 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.738; coverage=88.791; evalue=1.46e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100174130 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.571; coverage=88.791; evalue=1.47e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ssc:100049679 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.707; coverage=92.625; evalue=2.9e-52 | UniProtKB/Swiss-Prot DAT 2026 current_release |