Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_029907 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:103182207-103183499 (-) |
| Description | Similar to OGG1: N-glycosylase/DNA lyase OGG1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_029907 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 41 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g21710 |
Involved in repair of DNA damaged by oxidation by incising DNA at 8-oxoG residues. |
An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana.2001 · DOI: 10.1023/a:1013644026132
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006284 | base-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006285 | base-excision repair, AP site formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IGI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009314 | response to radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009410 | response to xenobiotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.796; coverage=79.733; evalue=2.94e-62; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009416 | response to light stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.796; coverage=79.733; evalue=2.94e-62; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032355 | response to estradiol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.527; coverage=78.933; evalue=1.16e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034599 | cellular response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.562; coverage=85.333; evalue=2.27e-57; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034614 | cellular response to reactive oxygen species | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IMP:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044029 | positive regulation of gene expression via chromosomal CpG island demethylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IMP:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045007 | depurination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045008 | depyrimidination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045471 | response to ethanol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.796; coverage=79.733; evalue=2.94e-62; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IMP:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051593 | response to folic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.796; coverage=79.733; evalue=2.94e-62; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071276 | cellular response to cadmium ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.796; coverage=79.733; evalue=2.94e-62; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901291 | negative regulation of double-strand break repair via single-strand annealing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=HTP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005759 | mitochondrial matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000702 | oxidized base lesion DNA N-glycosylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.527; coverage=78.933; evalue=1.16e-63; UniProt GO evidence=TAS:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003684 | damaged DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004519 | endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008017 | microtubule binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008534 | oxidized purine nucleobase lesion DNA N-glycosylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019104 | DNA N-glycosylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.527; coverage=78.933; evalue=1.16e-63; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IPI:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032357 | oxidized purine DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034039 | 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140078 | class I DNA-(apurinic or apyrimidinic site) endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G21710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.6; coverage=100.0; evalue=1.82e-160 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG1795 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.562; coverage=85.333; evalue=2.27e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:4968 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.851; coverage=78.933; evalue=8.77e-64 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:18294 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.527; coverage=78.933; evalue=1.16e-63 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:81528 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.796; coverage=79.733; evalue=2.94e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release |