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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_028979
Query referenceOH1004
LocationChr06:76791585-76791911 (+)
DescriptionSimilar to Os02g0460200: Flowering-promoting factor 1-like protein 3 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028979 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 10 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g24860 Modulates the competence to flowering of apical meristems.
FPF1 modulates the competence to flowering in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00461.x
FPF1 promotes flowering in Arabidopsis.1997 · DOI: 10.1105/tpc.9.8.1327

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0460200 Flowering-promoting factor 1-like protein 3. No verified direct reference in this release
Os04g0282400 Flowering-promoting factor 1-like protein 4. No verified direct reference in this release
Os01g0257300 GTP-binding protein that functions in the development of root systems, which are mediated by auxin.
Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity.2004 · DOI: 10.1104/pp.104.041996
Biochemical character of the purified OsRAA1, a novel rice protein with GTP-binding activity, and its expression pattern in Oryza sativa.2005 · DOI: 10.1016/j.jplph.2004.12.001
Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner.2008 · DOI: 10.1104/pp.108.125294

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009733response to auxinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.182; coverage=101.852; evalue=8.69e-42; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009909regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=105.556; evalue=6.99e-48; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009911positive regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.55; coverage=100.926; evalue=1.45e-42; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010228vegetative to reproductive phase transition of meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.55; coverage=100.926; evalue=1.45e-42; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045841negative regulation of mitotic metaphase/anaphase transitionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.182; coverage=101.852; evalue=8.69e-42; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000280regulation of root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.182; coverage=101.852; evalue=8.69e-42; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.55; coverage=100.926; evalue=1.45e-42; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.182; coverage=101.852; evalue=8.69e-42; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.55; coverage=100.926; evalue=1.45e-42; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005525GTP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.182; coverage=101.852; evalue=8.69e-42; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G24860KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.55; coverage=100.926; evalue=1.45e-42UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0257300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=58.182; coverage=101.852; evalue=8.69e-42UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0460200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.158; coverage=105.556; evalue=6.99e-48UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0282400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=58.929; coverage=103.704; evalue=1.1e-42UniProtKB/Swiss-Prot DAT 2026 current_release