Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_028849`
Query reference	OH1004
Location	Chr06:70778300-70779890 (-)
Description	Similar to HSF30: Heat shock factor protein HSF30 (Solanum peruvianum OX%3D4082)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028849 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26150`	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	The heat stress transcription factor HsfA2 serves as a regulatory amplifier of a subset of genes in the heat stress response in Arabidopsis.2006 · DOI: 10.1007/s11103-005-5750-x Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress.2006 · DOI: 10.1111/j.1365-313x.2006.02889.x A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis.2007 · DOI: 10.1104/pp.106.091322 An H3K27me3 demethylase-HSFA2 regulatory loop orchestrates transgenerational thermomemory in Arabidopsis.2019 · DOI: 10.1038/s41422-019-0145-8

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0178600`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os03g0161900`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os03g0795900`	Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE).	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.2008 · DOI: 10.1007/s00425-007-0670-4

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0001666	response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.925; coverage=94.901; evalue=6.58e-121; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.925; coverage=94.901; evalue=6.58e-121; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009408	response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010286	heat acclimation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034605	cellular response to heat	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.925; coverage=94.901; evalue=6.58e-121; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034620	cellular response to unfolded protein	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042542	response to hydrogen peroxide	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071456	cellular response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.925; coverage=94.901; evalue=6.58e-121; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.925; coverage=94.901; evalue=6.58e-121; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.925; coverage=94.901; evalue=6.58e-121; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990841	promoter-specific chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G26150	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.918; coverage=90.368; evalue=1.32e-111	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0161900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.784; coverage=57.79; evalue=5.09e-91	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0795900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.951; coverage=92.918; evalue=6.63e-91	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os07g0178600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.904; coverage=94.618; evalue=1.09e-96	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4331707	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.784; coverage=57.79; evalue=5.09e-91	UniProtKB/Swiss-Prot DAT 2026 current_release