Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_027697`
Query reference	OH1004
Location	Chr06:21992192-21995072 (+)
Description	Similar to LHP1: Chromo domain protein LHP1 (Solanum lycopersicum OX%3D4081)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027697 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 35 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g17690`	Structural component of heterochromatin involved in gene repression, including several floral homeotic genes and FLT that regulates flowering time.	Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis.2001 · DOI: 10.1242/dev.128.23.4847 Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes.2003 · DOI: 10.1093/pcp/pcg091 Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAL FLOWER2.2004 · DOI: 10.1023/b:plan.0000040897.49151.98 LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC.2006 · DOI: 10.1073/pnas.0507427103 Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1.2006 · DOI: 10.1038/ng1795 Polycomb silencing of KNOX genes confines shoot stem cell niches in Arabidopsis.2008 · DOI: 10.1016/j.cub.2008.11.019 The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.2016 · DOI: 10.1105/tpc.16.00244 The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana.1998 · DOI: 10.1093/genetics/149.2.597

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0324900`	Structural component of heterochromatin involved in gene repression.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003006	developmental process involved in reproduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.578; coverage=16.633; evalue=1.94e-12; UniProt GO evidence=IEP:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006325	chromatin organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009410	response to xenobiotic stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.578; coverage=16.633; evalue=1.94e-12; UniProt GO evidence=IEP:RGD	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009648	photoperiodism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009744	response to sucrose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009825	multidimensional cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009910	negative regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010016	shoot system morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010048	vernalization response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031507	heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000791	euchromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000792	heterochromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031519	PcG protein complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035102	PRC1 complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003727	single-stranded RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003935	GTP cyclohydrolase II activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.945; coverage=72.745; evalue=1.52e-64; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0062072	histone H3K9me2/3 reader activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G17690	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.886; coverage=70.341; evalue=2e-57	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:52609	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.578; coverage=16.633; evalue=1.73e-12	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	rno:362962	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.578; coverage=16.633; evalue=1.94e-12	UniProtKB/Swiss-Prot DAT 2026 current_release