Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_027406 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:15028870-15031323 (-) |
| Description | Similar to RFC1: Replication factor C subunit 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_027406 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g22010 |
Plays a role as mediator of transcriptional gene silencing (TGS), DNA replication, DNA repair, hypersensitive response (HR) and telomere length regulation. |
Arabidopsis replication factor C subunit 1 plays an important role in embryogenesis.2007 · PMID: 17556804 DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis.2010 · DOI: 10.1105/tpc.110.076349
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os11g0572100 |
May be involved in DNA replication and thus regulate cell proliferation. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000712 | resolution of meiotic recombination intermediates | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006260 | DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006901 | vesicle coating | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048208 | COPII vesicle coating | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051321 | meiotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0099022 | vesicle tethering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.396; coverage=23.556; evalue=2.21e-08; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005663 | DNA replication factor C complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.396; coverage=23.556; evalue=2.21e-08; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030008 | TRAPP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.396; coverage=23.556; evalue=2.02e-08; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035578 | azurophil granule lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.396; coverage=23.556; evalue=2.21e-08; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003689 | DNA clamp loader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G22010 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.444; coverage=20.0; evalue=2.35e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os11g0572100 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=70.588; coverage=15.111; evalue=3.12e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:58485 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.396; coverage=23.556; evalue=2.21e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:245828 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.396; coverage=23.556; evalue=2.02e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:287427 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.396; coverage=23.556; evalue=2.02e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |