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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_026967
Query referenceOH1004
LocationChr06:6240581-6243122 (-)
DescriptionSimilar to THIC: Phosphomethylpyrimidine synthase%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_026967 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g29630 Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC.2007 · DOI: 10.1073/pnas.0709597104
AtTHIC, a gene involved in thiamine biosynthesis in Arabidopsis thaliana.2008 · DOI: 10.1038/cr.2008.35

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009228thiamine biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009229thiamine diphosphate biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010266response to vitamin B1Biological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.851; coverage=95.504; evalue=0.0; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.851; coverage=95.504; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019904protein domain specific bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IPI:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051536iron-sulfur cluster bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00515394 iron, 4 sulfur cluster bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070284phosphomethylpyrimidine synthase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G29630KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.876; coverage=100.0; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbcy:Bcer98_3762KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.478; coverage=89.147; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbha:BH1933KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.851; coverage=95.504; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpmy:Pmen_0609KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.963; coverage=93.333; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpsa:PST_3816KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.065; coverage=93.178; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release