Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_026490 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:127243757-127244383 (+) |
| Description | Similar to RING1: E3 ubiquitin-protein ligase RING1 (Gossypium hirsutum OX%3D3635) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_026490 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g19950 |
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. | No verified direct reference in this release |
At2g40830 |
Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. | No verified direct reference in this release |
At1g26800 |
E3 ubiquitin-protein ligase involved in protein quality control (PQC) under proteotoxic stress. |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os05g0488800 |
Possesses E3 ubiqutin-protein ligase activity in vitro. |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=96.154; evalue=6.82e-48; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.485; coverage=49.519; evalue=1.54e-31; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009938 | negative regulation of gibberellic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.485; coverage=49.519; evalue=1.54e-31; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.439; coverage=78.846; evalue=7.61e-56; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061635 | regulation of protein complex stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071218 | cellular response to misfolded protein | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071456 | cellular response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=HEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071629 | cytoplasm protein quality control by the ubiquitin-proteasome system | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090378 | seed trichome elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.439; coverage=78.846; evalue=7.61e-56; UniProt GO evidence=IEP:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.553; coverage=77.404; evalue=2.76e-53; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.439; coverage=78.846; evalue=7.61e-56; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009505 | plant-type cell wall | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.485; coverage=49.519; evalue=1.54e-31; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.485; coverage=49.519; evalue=1.54e-31; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.439; coverage=78.846; evalue=7.61e-56; UniProt GO evidence=IDA:AgBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.439; coverage=78.846; evalue=7.61e-56; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051787 | misfolded protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.439; coverage=78.846; evalue=7.61e-56; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G26800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.889; coverage=77.885; evalue=1.18e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G40830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.485; coverage=49.519; evalue=1.54e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G19950 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.553; coverage=77.404; evalue=2.76e-53 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os05g0488800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=96.154; evalue=6.82e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4339152 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=96.154; evalue=6.82e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release |