Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024894 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:101620933-101623226 (-) |
| Description | Similar to HCS1: Biotin--protein ligase 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024894 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g25710 |
Plays a major role in biotin-dependent carboxylase biotinylation. | |
At1g37150 |
Seems to have no or limited implication in biotin-dependent carboxylase biotinylation in planta. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006768 | biotin metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042966 | biotin carboxyl carrier protein biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043687 | post-translational protein modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051604 | protein maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.1; coverage=73.105; evalue=1.35e-31; UniProt GO evidence=NAS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070781 | response to biotin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005652 | nuclear lamina | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004077 | biotin--[biotin carboxyl-carrier protein] ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009374 | biotin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016874 | ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.682; coverage=86.064; evalue=1.63e-135; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G37150 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.682; coverage=86.064; evalue=1.63e-135 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G25710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.385; coverage=93.888; evalue=1.16e-141 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:3141 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.636; coverage=67.237; evalue=1.91e-37 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:110948 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.909; coverage=67.237; evalue=1.61e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540476 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.1; coverage=73.105; evalue=1.35e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release |