Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024434 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:90373081-90375499 (+) |
| Description | Similar to UBP12: Ubiquitin carboxyl-terminal hydrolase 12 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024434 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 46 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g06600 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. | No verified direct reference in this release |
At3g11910 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006283 | transcription-coupled nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006307 | DNA alkylation repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009867 | jasmonic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010078 | maintenance of root meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010803 | regulation of tumor necrosis factor-mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.255; coverage=88.698; evalue=7.69e-22; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031647 | regulation of protein stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032435 | negative regulation of proteasomal ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035520 | monoubiquitinated protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044027 | negative regulation of gene expression via chromosomal CpG island methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045721 | negative regulation of gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048511 | rhythmic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050821 | protein stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070203 | regulation of establishment of protein localization to telomere | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070646 | protein modification by small protein removal | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0075342 | symbiont-mediated disruption of host cell PML body | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140374 | antiviral innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140673 | transcription elongation-coupled chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904262 | negative regulation of TORC1 signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904332 | negative regulation of error-prone translesion synthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.825; coverage=84.029; evalue=3.1e-24; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904353 | regulation of telomere capping | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.255; coverage=88.698; evalue=7.69e-22; UniProt GO evidence=TAS:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905279 | regulation of retrograde transport, endosome to Golgi | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990505 | mitotic DNA replication maintenance of fidelity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.825; coverage=84.029; evalue=3.1e-24; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000280 | regulation of root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001741 | XY body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.255; coverage=88.698; evalue=7.69e-22; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.836; coverage=86.978; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905368 | peptidase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002039 | p53 binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004175 | endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.825; coverage=84.029; evalue=3.1e-24; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004197 | cysteine-type endopeptidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=IPI:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0101005 | deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.825; coverage=84.029; evalue=3.1e-24; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140492 | metal-dependent deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.825; coverage=84.029; evalue=3.1e-24; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990380 | K48-linked deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G11910 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.836; coverage=86.978; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G06600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=77.904; coverage=86.732; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:7874 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.255; coverage=88.698; evalue=7.69e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:360471 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.809; coverage=88.698; evalue=1.73e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2541131 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.825; coverage=84.029; evalue=3.1e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release |