Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_024177 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:83246638-83249987 (-) |
| Description | Similar to NTF2: Nuclear transport factor 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_024177 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g60980 |
Involved in RNA-directed DNA methylation (RdDM). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0007265 | Ras protein signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.394; coverage=25.0; evalue=2.17e-17; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032481 | positive regulation of type I interferon production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034063 | stress granule assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051607 | defense response to virus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090090 | negative regulation of canonical Wnt signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=25.0; evalue=2.94e-17; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005925 | focal adhesion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.394; coverage=25.0; evalue=2.17e-17; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010494 | cytoplasmic stress granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003678 | DNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.394; coverage=25.0; evalue=2.17e-17; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003724 | RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004519 | endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033677 | DNA/RNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043024 | ribosomal small subunit binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140693 | molecular condensate scaffold activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G60980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.942; coverage=78.22; evalue=1.79e-90 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:534214 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.394; coverage=25.0; evalue=2.14e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10146 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.394; coverage=25.0; evalue=2.17e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:27041 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.636; coverage=25.0; evalue=2.94e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100172476 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.394; coverage=25.0; evalue=2.1e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release |