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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_023265
Query referenceOH1004
LocationChr05:29248674-29251723 (-)
DescriptionSimilar to NTL8: NAC domain-containing protein 40 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_023265 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 32 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g27300 Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity.
A membrane-associated NAC transcription factor regulates salt-responsive flowering via FLOWERING LOCUS T in Arabidopsis.2007 · DOI: 10.1007/s00425-007-0513-3
A membrane-bound NAC transcription factor NTL8 regulates gibberellic acid-mediated salt signaling in Arabidopsis seed germination.2008 · DOI: 10.1111/j.1365-313x.2008.03493.x
Membrane-mediated salt stress signaling in flowering time control.2007 · DOI: 10.4161/psb.2.6.4645
At3g44290 Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). No verified direct reference in this release
At5g22290 Transcription factor involved in plant cell division. No verified direct reference in this release
At4g35580 Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).
Identification of a calmodulin-binding NAC protein as a transcriptional repressor in Arabidopsis.2007 · DOI: 10.1074/jbc.m705217200
Regulation of leaf senescence by NTL9-mediated osmotic stress signaling in Arabidopsis.2008 · PMID: 18443413
A NAC transcription factor and SNI1 cooperatively suppress basal pathogen resistance in Arabidopsis thaliana.2012 · DOI: 10.1093/nar/gks683
The Pseudomonas syringae type III effector HopD1 suppresses effector-triggered immunity, localizes to the endoplasmic reticulum, and targets the Arabidopsis transcription factor NTL9.2014 · DOI: 10.1111/nph.12626

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0261200 Transcription activator involved in heat and endoplasmic reticulum (ER) stress responses.
A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.2020 · DOI: 10.1111/pbi.13297

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006986response to unfolded proteinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.663; coverage=38.497; evalue=4.97e-51; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009626plant-type hypersensitive responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.394; coverage=57.859; evalue=3.54e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009651response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009739response to gibberellinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009740gibberellic acid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009845seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.394; coverage=57.859; evalue=3.54e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009938negative regulation of gibberellic acid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031347regulation of defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033619membrane protein proteolysisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034976response to endoplasmic reticulum stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.394; coverage=57.859; evalue=3.54e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071333cellular response to glucose stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.407; coverage=57.631; evalue=1.37e-77; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071470cellular response to osmotic stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071472cellular response to salt stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900426positive regulation of defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000039regulation of trichome morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.394; coverage=57.859; evalue=3.54e-76; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.407; coverage=57.631; evalue=1.37e-77; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.407; coverage=57.631; evalue=1.37e-77; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005516calmodulin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G27300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.699; coverage=61.276; evalue=1.37e-79UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G44290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.407; coverage=57.631; evalue=1.37e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G35580KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.792; coverage=35.08; evalue=4.86e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G22290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.394; coverage=57.859; evalue=3.54e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0261200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.663; coverage=38.497; evalue=4.97e-51UniProtKB/Swiss-Prot DAT 2026 current_release