Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_023156 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:25055073-25056155 (+) |
| Description | Similar to MTERF4: Transcription termination factor MTERF4%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_023156 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g02990 |
Transcription termination factor required for processing and steady-state levels of plastid transcripts. | No verified direct reference in this release |
At4g14605 |
Transcription termination factor required for processing and steady-state levels of plastid transcripts. | |
At5g54180 |
Transcription termination factor that is transcriptionally active in chloroplasts. | No verified direct reference in this release |
At2g21710 |
Transcription termination factor involved in processing of plastid transcripts (By similarity). | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os05g0404000 |
Transcription termination factor required for processing and steady-state levels of plastid transcripts. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006353 | DNA-templated transcription termination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006393 | termination of mitochondrial transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.888; coverage=64.722; evalue=2.71e-08; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006970 | response to osmotic stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015979 | photosynthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.888; coverage=64.722; evalue=2.71e-08; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032502 | developmental process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042793 | plastid transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042794 | plastid rRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.323; coverage=86.111; evalue=6.61e-07; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.394; coverage=71.944; evalue=1.43e-06; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.888; coverage=64.722; evalue=2.71e-08; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.323; coverage=86.111; evalue=6.61e-07; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990837 | sequence-specific double-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G21710 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.323; coverage=86.111; evalue=6.61e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G02990 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=23.906; coverage=82.5; evalue=3.32e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G14605 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.254; coverage=74.444; evalue=6.37e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G54180 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.888; coverage=64.722; evalue=2.71e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os05g0404000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=22.394; coverage=71.944; evalue=1.43e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release |