Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021998 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:142244764-142250607 (-) |
| Description | Similar to ELP6: Elongator complex protein 6 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021998 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 30 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g10090 |
Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine) (By similarity). | No verified direct reference in this release |
At1g58440 |
May catalyze stereospecific oxidation of squalene to (S)-2,3-epoxysqualene in sterol biosynthesis. |
Arabidopsis thaliana squalene epoxidase 1 is essential for root and seed development.2007 · DOI: 10.1074/jbc.m611831200
|
At2g22830 |
Catalyzes the stereospecific oxidation of squalene to (S)-2,3-epoxysqualene, and is considered to be a rate-limiting enzyme in steroid biosynthesis. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002098 | tRNA wobble uridine modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002238 | response to molecule of fungal origin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.59; coverage=55.079; evalue=6.1e-68; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009723 | response to ethylene | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009725 | response to hormone | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.694; coverage=54.628; evalue=1.22e-59; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009751 | response to salicylic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009753 | response to jasmonic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009926 | auxin polar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010015 | root morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010016 | shoot system morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010038 | response to metal ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016126 | sterol biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031538 | negative regulation of anthocyanin metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042542 | response to hydrogen peroxide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046246 | terpene biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071731 | response to nitric oxide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902438 | response to vanadate(3-) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000024 | regulation of leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.59; coverage=55.079; evalue=6.1e-68; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.029; coverage=54.853; evalue=3.65e-68; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031966 | mitochondrial membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.694; coverage=54.628; evalue=1.22e-59; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033588 | elongator holoenzyme complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004506 | squalene monooxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050660 | flavin adenine dinucleotide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.086; coverage=54.853; evalue=1.87e-70; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G58440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.59; coverage=55.079; evalue=6.1e-68 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G22830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=46.694; coverage=54.628; evalue=1.22e-59 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G10090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.14; coverage=58.014; evalue=2.87e-82 | UniProtKB/Swiss-Prot DAT 2026 current_release |