Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_021839 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:138394329-138398252 (+) |
| Description | Similar to SYN1: Sister chromatid cohesion 1 protein 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_021839 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 45 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g05490 |
Involved in chromosome condensation, pairing and segregation during meiosis. | No verified direct reference in this release |
At5g16270 |
Involved in sister chromatid and centromere cohesion during mitosis. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001666 | response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006302 | double-strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IDA:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007059 | chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007062 | sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007131 | reciprocal meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010032 | meiotic chromosome condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010628 | positive regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.063; coverage=23.177; evalue=2.02e-17; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010629 | negative regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.063; coverage=23.177; evalue=2.02e-17; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010972 | negative regulation of G2/M transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032691 | negative regulation of interleukin-1 beta production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032720 | negative regulation of tumor necrosis factor production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032733 | positive regulation of interleukin-10 production | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034087 | establishment of mitotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034089 | establishment of meiotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045841 | negative regulation of mitotic metaphase/anaphase transition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045876 | positive regulation of sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051276 | chromosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051455 | spindle attachment to meiosis I kinetochore | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051754 | meiotic sister chromatid cohesion, centromeric | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070601 | centromeric sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071168 | protein localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140588 | chromatin looping | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.063; coverage=23.177; evalue=2.02e-17; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990414 | replication-born double-strand break repair via sister chromatid exchange | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000775 | chromosome, centromeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000794 | condensed nuclear chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000922 | spindle pole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005694 | chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008278 | cohesin complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030496 | midbody | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.063; coverage=23.177; evalue=2.02e-17; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030892 | mitotic cohesin complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.063; coverage=23.177; evalue=2.02e-17; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030893 | meiotic cohesin complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000987 | cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106222 | lncRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G05490 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.565; coverage=104.376; evalue=5.42e-151 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G16270 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.495; coverage=33.387; evalue=9.27e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:540966 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.063; coverage=23.177; evalue=2.16e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:5885 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.063; coverage=23.177; evalue=1.97e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:19357 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.063; coverage=23.177; evalue=2.02e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release |