Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_020004 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:47263720-47264493 (-) |
| Description | Similar to ATL41: E3 ubiquitin-protein ligase ATL41 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_020004 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g42360 |
E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28, UBC29, UBC30, UBC35 and UBC36 in vitro. | No verified direct reference in this release |
At2g42350 |
RING-H2 finger protein ATL40. | No verified direct reference in this release |
At3g16720 |
May be involved in the early steps of the plant defense signaling pathway. | No verified direct reference in this release |
At3g62690 |
RING-H2 finger protein ATL5. | No verified direct reference in this release |
At1g20823 |
May be involved in the early steps of the plant defense signaling pathway. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006952 | defense response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.522; coverage=107.393; evalue=1.35e-27; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009909 | regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.811; coverage=57.588; evalue=4.82e-20; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010966 | regulation of phosphate transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.811; coverage=57.588; evalue=4.82e-20; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.569; coverage=99.222; evalue=8.5e-47; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0065003 | protein-containing complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.324; coverage=55.253; evalue=1.29e-20; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070417 | cellular response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.811; coverage=57.588; evalue=4.82e-20; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.538; coverage=101.167; evalue=9.16e-35; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.811; coverage=57.588; evalue=4.82e-20; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.811; coverage=57.588; evalue=4.82e-20; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.569; coverage=99.222; evalue=8.5e-47; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.569; coverage=99.222; evalue=8.5e-47; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.569; coverage=99.222; evalue=8.5e-47; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.569; coverage=99.222; evalue=8.5e-47; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061659 | ubiquitin-like protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.324; coverage=55.253; evalue=1.29e-20; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G20823 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.811; coverage=57.588; evalue=4.82e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G42350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.538; coverage=101.167; evalue=9.16e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G42360 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.569; coverage=99.222; evalue=8.5e-47 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G16720 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.522; coverage=107.393; evalue=1.35e-27 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G62690 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.324; coverage=55.253; evalue=1.29e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release |