Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_019167 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:25184157-25189445 (+) |
| Description | Similar to LAX1: Transcription factor LAX PANICLE 1 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_019167 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g01310 |
Transcription factor bHLH140. | No verified direct reference in this release |
At3g21330 |
Transcription factor bHLH87. | No verified direct reference in this release |
At4g00120 |
Transcription regulator required for seed dispersal. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0831000 |
Transcription factor that seems to regulate organogenesis in postembryonic development. | |
Os05g0541400 |
Transcription factor involved in the negative regulation of flowering. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000012 | single strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006260 | DNA replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.875; coverage=20.168; evalue=2.19e-16; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006790 | sulfur compound metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009150 | purine ribonucleotide metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010197 | polar nucleus fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.0; coverage=15.756; evalue=3.22e-15; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048586 | regulation of long-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.968; coverage=13.235; evalue=6.7e-14; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048587 | regulation of short-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.968; coverage=13.235; evalue=6.7e-14; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000032 | regulation of secondary shoot formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.875; coverage=20.168; evalue=2.19e-16; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003725 | double-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030983 | mismatched DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033699 | DNA 5'-adenosine monophosphate hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046983 | protein dimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0047627 | adenylylsulfatase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990165 | single-strand break-containing DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.172; coverage=24.37; evalue=4.92e-23; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G21330 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.875; coverage=20.168; evalue=2.19e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G00120 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.0; coverage=15.756; evalue=3.22e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0831000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.846; coverage=13.655; evalue=9.54e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os05g0541400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.968; coverage=13.235; evalue=6.7e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:9269440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.968; coverage=13.235; evalue=6.7e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release |