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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_018602
Query referenceOH1004
LocationChr04:15460914-15466019 (+)
DescriptionSimilar to CFM3: CRM-domain containing factor CFM3%2C chloroplastic/mitochondrial (Zea mays OX%3D4577)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018602 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23070 Binds specific group II introns in chloroplasts and facilitates their splicing. No verified direct reference in this release
At4g14510 Binds specific group II introns in chloroplasts and facilitates their splicing.
The bRPS6-Family Protein RFC3 Prevents Interference by the Splicing Factor CFM3b during Plastid rRNA Biogenesis in Arabidopsis thaliana .2020 · DOI: 10.3390/plants9030328
At3g01370 Binds specific group II introns in chloroplasts and facilitates their splicing.
A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts.2007 · DOI: 10.1105/tpc.107.055160

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0592400 Binds specific group II introns in chloroplasts and facilitates their splicing.
Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts.2008 · DOI: 10.1261/rna.1223708

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000372Group I intron splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.365; coverage=62.784; evalue=1.43e-149; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000373Group II intron splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006364rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.051; coverage=69.175; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.051; coverage=69.175; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042794plastid rRNA transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.051; coverage=69.175; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.828; coverage=60.0; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009532plastid stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.365; coverage=62.784; evalue=1.43e-149; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.051; coverage=69.175; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990904ribonucleoprotein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G01370KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.365; coverage=62.784; evalue=1.43e-149UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G23070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.828; coverage=60.0; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G14510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.051; coverage=69.175; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os11g0592400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=48.558; coverage=64.33; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:100126360KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.08; coverage=67.113; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release