Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_016788 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:133731579-133731932 (+) |
| Description | Similar to NFYB5: Nuclear transcription factor Y subunit B-5 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_016788 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g47810 |
Component of the NF-Y/HAP transcription factor complex. | No verified direct reference in this release |
At1g09030 |
Component of the NF-Y/HAP transcription factor complex. | No verified direct reference in this release |
At4g14540 |
Component of the NF-Y/HAP transcription factor complex (By similarity). | No verified direct reference in this release |
At5g47640 |
Component of the NF-Y/HAP transcription factor complex (By similarity). | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0413000 |
Component of the NF-Y/HAP transcription factor complex. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.393; coverage=95.726; evalue=2.57e-50; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009408 | response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.0; coverage=85.47; evalue=6.7e-45; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.0; coverage=85.47; evalue=6.7e-45; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.0; coverage=85.47; evalue=6.7e-45; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048574 | long-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.813; coverage=91.453; evalue=2.8e-43; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.741; coverage=92.308; evalue=5.05e-47; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.0; coverage=85.47; evalue=6.7e-45; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.813; coverage=91.453; evalue=2.8e-43; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016602 | CCAAT-binding factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.813; coverage=91.453; evalue=2.8e-43; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003712 | transcription coregulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.813; coverage=91.453; evalue=2.8e-43; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046982 | protein heterodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G09030 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.393; coverage=95.726; evalue=2.57e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G47810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.789; coverage=81.197; evalue=2.64e-52 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G14540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.0; coverage=85.47; evalue=6.7e-45 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G47640 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.813; coverage=91.453; evalue=2.8e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0413000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.741; coverage=92.308; evalue=5.05e-47 | UniProtKB/Swiss-Prot DAT 2026 current_release |