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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_015353
Query referenceOH1004
LocationChr03:69265302-69269277 (+)
DescriptionSimilar to RH40: DEAD-box ATP-dependent RNA helicase 40 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_015353 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 10 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06480 ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. No verified direct reference in this release
At5g14610 DEAD-box ATP-dependent RNA helicase 46. No verified direct reference in this release
At3g01540 ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing.
Characterization of a DEAD box ATPase/RNA helicase protein of Arabidopsis thaliana.1998 · DOI: 10.1093/nar/26.11.2638

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0172200 ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006364rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.292; coverage=42.785; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.186; coverage=48.739; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003724RNA helicase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G06480KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.359; coverage=86.478; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G14610KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.292; coverage=42.785; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGnsy:104219642KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=70.186; coverage=48.739; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release