Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_014961`
Query reference	OH1004
Location	Chr03:60485818-60490751 (-)
Description	Similar to AGO1B: Protein argonaute 1B (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014961 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g48410`	Involved in RNA-mediated post-transcriptional gene silencing (PTGS).	Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.2005 · DOI: 10.1073/pnas.0505461102 Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense.2006 · DOI: 10.1101/gad.1495506 Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.2008 · DOI: 10.1016/j.cell.2008.02.034 Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1.2008 · DOI: 10.1073/pnas.0805760105 Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing.2009 · DOI: 10.1371/journal.pgen.1000646 The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.2009 · DOI: 10.1261/rna.1646909 Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.2010 · DOI: 10.1038/nsmb.1866 AGO1 defines a novel locus of Arabidopsis controlling leaf development.1998 · DOI: 10.1093/emboj/17.1.170

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0566500`	Involved in the RNA silencing pathway, especially during antiviral responses.	No verified direct reference in this release
`Os02g0672200`	Involved in the RNA silencing pathway, especially during antiviral responses.	No verified direct reference in this release
`Os06g0729300`	Probably involved in the RNA silencing pathway.	No verified direct reference in this release
`Os02g0831600`	Involved in the RNA silencing pathway, especially during antiviral responses.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009616	RNAi-mediated antiviral immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.59; coverage=87.546; evalue=0.0; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009850	auxin metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009955	adaxial/abaxial pattern specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009965	leaf morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010218	response to far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010267	ta-siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010305	leaf vascular tissue pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010589	leaf proximal/distal pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016441	post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IGI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031047	regulatory ncRNA-mediated gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.59; coverage=87.546; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035195	miRNA-mediated post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045087	innate immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048830	adventitious root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051607	defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.59; coverage=87.546; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.59; coverage=87.546; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0036464	cytoplasmic ribonucleoprotein granule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990904	ribonucleoprotein complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.59; coverage=87.546; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004521	RNA endonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.59; coverage=87.546; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035197	siRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035198	miRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IDA:CAFA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G48410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=74.544; coverage=100.366; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0672200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=72.252; coverage=101.648; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0831600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=75.924; coverage=86.722; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0729300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.639; coverage=88.828; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release