Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_014712`
Query reference	OH1004
Location	Chr03:55311806-55316246 (-)
Description	Similar to AGO4: Protein argonaute 4 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014712 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27040`	Together with RDM3, required for transcriptional gene silencing (TGS) by DNA methylation and repressive histone modifications (H3K9me2) of several chromatin loci.	ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation.2003 · DOI: 10.1126/science.1079695 Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.2004 · DOI: 10.1016/j.cub.2004.06.055 The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.2006 · DOI: 10.1016/j.cell.2006.05.031 An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.2006 · DOI: 10.1016/j.cell.2006.05.032 Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.2006 · DOI: 10.1038/nature05198 Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.2007 · DOI: 10.1101/gad.451207 ARGONAUTE4 is required for resistance to Pseudomonas syringae in Arabidopsis.2007 · DOI: 10.1105/tpc.107.054494 Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.2008 · DOI: 10.1016/j.cell.2008.02.034 Viral genome methylation as an epigenetic defense against geminiviruses.2008 · DOI: 10.1128/jvi.00719-08 RNA polymerase V transcription guides ARGONAUTE4 to chromatin.2009 · DOI: 10.1038/ng.365 The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.2010 · DOI: 10.1105/tpc.109.072199 Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing.2011 · DOI: 10.1371/journal.pgen.1002120
`At5g21150`	Involved in RNA-mediated post-transcriptional gene silencing (PTGS).	The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.2010 · DOI: 10.1105/tpc.109.072199 Control of female gamete formation by a small RNA pathway in Arabidopsis.2010 · DOI: 10.1038/nature08828 ARGONAUTE9-dependent silencing of transposable elements in pericentromeric regions of Arabidopsis.2010 · DOI: 10.1038/nature08828

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0275600`	Probably involved in the RNA silencing pathway.	No verified direct reference in this release
`Os04g0151800`	Probably involved in the RNA silencing pathway.	No verified direct reference in this release
`Os07g0265600`	Probably involved in the RNA silencing pathway.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006417	regulation of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009554	megasporogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.834; coverage=100.329; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010526	transposable element silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.834; coverage=100.329; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030422	siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031047	regulatory ncRNA-mediated gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031048	regulatory ncRNA-mediated heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031507	heterochromatin formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048481	plant ovule development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.834; coverage=100.329; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051607	defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080188	gene silencing by siRNA-directed DNA methylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904159	megasporocyte differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.834; coverage=100.329; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000791	euchromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015030	Cajal body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0036464	cytoplasmic ribonucleoprotein granule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990904	ribonucleoprotein complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004521	RNA endonuclease activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035197	siRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035198	miRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0; UniProt GO evidence=IDA:CAFA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G27040	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.768; coverage=96.487; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G21150	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.834; coverage=100.329; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0275600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.772; coverage=96.158; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0151800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.483; coverage=97.695; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os07g0265600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=63.771; coverage=96.048; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4324438	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.772; coverage=96.158; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release