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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_014044
Query referenceOH1004
LocationChr03:41089088-41090932 (+)
DescriptionSimilar to ALY4: THO complex subunit 4D (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_014044 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g37720 Export adapter involved in nuclear export of spliced and unspliced mRNA.
Arabidopsis coactivator ALY-like proteins, DIP1 and DIP2, interact physically with the DNA-binding domain of the Zn-finger poly(ADP-ribose) polymerase.2001 · DOI: 10.1093/jxb/52.359.1375
ALY proteins participate in multifaceted Nep1Mo-triggered responses in Nicotiana benthamiana and Arabidopsis thaliana.2014 · DOI: 10.1093/jxb/eru136
At1g66260 Export adapter involved in nuclear export of spliced and unspliced mRNA.
Arabidopsis coactivator ALY-like proteins, DIP1 and DIP2, interact physically with the DNA-binding domain of the Zn-finger poly(ADP-ribose) polymerase.2001 · DOI: 10.1093/jxb/52.359.1375
At5g59950 Export adapter involved in nuclear export of spliced and unspliced mRNA. No verified direct reference in this release
At5g02530 Export adapter involved in nuclear export of spliced and unspliced mRNA. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006364rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.789; coverage=38.558; evalue=7.36e-47; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006405RNA export from nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006406mRNA export from nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008380RNA splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.789; coverage=38.558; evalue=7.36e-47; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.282; coverage=32.288; evalue=6.04e-32; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.13; coverage=64.89; evalue=4.74e-33; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0062153C5-methylcytidine-containing RNA reader activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G66260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.789; coverage=38.558; evalue=7.36e-47UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G02530KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.282; coverage=32.288; evalue=6.04e-32UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G37720KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.497; coverage=59.248; evalue=2.77e-52UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G59950KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.13; coverage=64.89; evalue=4.74e-33UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxtr:549781KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.276; coverage=36.364; evalue=4.41e-26UniProtKB/Swiss-Prot DAT 2026 current_release