Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013978 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:39555061-39556936 (+) |
| Description | Similar to At3g06530: Uncharacterized protein At3g06530 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013978 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g06530 |
Involved in nucleolar processing of pre-18S ribosomal RNA. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.667; coverage=62.069; evalue=4.54e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.667; coverage=62.069; evalue=4.54e-08; UniProt GO evidence=ISS:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030490 | maturation of SSU-rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.714; coverage=72.414; evalue=1.13e-10; UniProt GO evidence=ISS:PAMGO_MGG | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042254 | ribosome biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.714; coverage=72.414; evalue=1.13e-10; UniProt GO evidence=ISS:PAMGO_MGG | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042274 | ribosomal small subunit biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.667; coverage=62.069; evalue=4.54e-08; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045943 | positive regulation of transcription by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.714; coverage=72.414; evalue=1.13e-10; UniProt GO evidence=ISS:PAMGO_MGG | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.714; coverage=72.414; evalue=1.13e-10; UniProt GO evidence=ISS:PAMGO_MGG | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.028; coverage=61.207; evalue=1.21e-08; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030686 | 90S preribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032040 | small-subunit processome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034455 | t-UTP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030515 | snoRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G06530 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=62.069; evalue=3.66e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0285875 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.667; coverage=62.069; evalue=4.54e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mgr:MGG_04995 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.714; coverage=72.414; evalue=1.13e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release |