Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013260 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:26646938-26647987 (-) |
| Description | Similar to 28 kDa ribonucleoprotein%2C chloroplastic (Spinacia oleracea OX%3D3562) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013260 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g50250 |
Required for specific RNA editing events in chloroplasts and stabilizes specific chloroplast mRNAs. | No verified direct reference in this release |
At4g24770 |
Required for specific RNA editing events in chloroplasts and stabilizes specific chloroplast mRNAs. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=TAS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009451 | RNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009631 | cold acclimation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016553 | base conversion or substitution editing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043489 | RNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901259 | chloroplast rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.979; coverage=105.861; evalue=1.72e-96; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.979; coverage=105.861; evalue=1.72e-96; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.979; coverage=105.861; evalue=1.72e-96; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009579 | thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.979; coverage=105.861; evalue=1.72e-96; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008266 | poly(U) RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.378; coverage=85.348; evalue=1.1e-96; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G24770 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.945; coverage=100.0; evalue=3.19e-91 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G50250 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.979; coverage=105.861; evalue=1.72e-96 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nsy:104227036 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.333; coverage=65.934; evalue=3.99e-90 | UniProtKB/Swiss-Prot DAT 2026 current_release |