Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013145 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:24828430-24830006 (+) |
| Description | Similar to MMD1: PHD finger protein MALE MEIOCYTE DEATH 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013145 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g66170 |
Probable transcription factor required for chromosome organization and progression during male meiosis (e.g. microsporogenesis). |
The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis.2003 · DOI: 10.1105/tpc.010447 The DUET gene is necessary for chromosome organization and progression during male meiosis in Arabidopsis and encodes a PHD finger protein.2003 · DOI: 10.1242/dev.00827
|
At5g22260 |
Transcriptional activator required for anther and post-meiotic pollen development and maturation. | No verified direct reference in this release |
At2g01810 |
PHD finger protein At2g01810. | No verified direct reference in this release |
At1g33420 |
PHD finger protein At1g33420. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os09g0449000 |
Probable transcriptional activator required for tapetal programmed cell death (PCD) and degeneration, and pollen development in anthers. |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000212 | meiotic spindle organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007060 | male meiosis chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007140 | male meiotic nuclear division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.397; coverage=102.473; evalue=2.53e-20; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009846 | pollen germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010032 | meiotic chromosome condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010208 | pollen wall assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010628 | positive regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022414 | reproductive process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IMP:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043068 | positive regulation of programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.397; coverage=102.473; evalue=2.53e-20; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048235 | pollen sperm cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048655 | anther wall tapetum morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051321 | meiotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055046 | microgametogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071367 | cellular response to brassinosteroid stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905821 | positive regulation of chromosome condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042393 | histone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990188 | euchromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G33420 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.843; coverage=52.473; evalue=3.26e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G66170 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=26.647; coverage=91.758; evalue=6.44e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G01810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.733; coverage=55.495; evalue=1.77e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G22260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.455; coverage=113.462; evalue=1.42e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os09g0449000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=24.397; coverage=102.473; evalue=2.53e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release |