Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012643`
Query reference	OH1004
Location	Chr03:16206868-16208215 (-)
Description	Similar to WRKY44: WRKY transcription factor 44 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012643 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37260`	Transcription factor.	TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor.2002 · DOI: 10.1105/tpc.001404
`At2g03340`	Transcription factor.	No verified direct reference in this release
`At1g13960`	Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis- acting element.	Roles of Arabidopsis WRKY3 and WRKY4 transcription factors in plant responses to pathogens.2008 · DOI: 10.1186/1471-2229-8-68 Structural basis for sequence-specific DNA recognition by an Arabidopsis WRKY transcription factor.2012 · DOI: 10.1074/jbc.m111.279844

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0826400`	May participate in transcriptional regulation of abscisic acid and gibberellin signaling.	Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells.2005 · DOI: 10.1104/pp.104.054312 A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.2009 · DOI: 10.1007/s11103-009-9463-4

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.25; coverage=67.606; evalue=4.67e-67; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.187; coverage=69.296; evalue=1.33e-65; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009751	response to salicylic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010214	seed coat development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090628	plant epidermal cell fate specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900150	regulation of defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900425	negative regulation of defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.187; coverage=69.296; evalue=1.33e-65; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G13960	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.898; coverage=69.014; evalue=2.6e-65	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G03340	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=46.25; coverage=67.606; evalue=4.67e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G37260	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.187; coverage=120.563; evalue=1.44e-84	UniProtKB/Swiss-Prot DAT 2026 current_release