Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009794 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:133483776-133489055 (-) |
| Description | Similar to CMT3: DNA (cytosine-5)-methyltransferase CMT3 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009794 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g69770 |
Involved in the CpXpG methylation (e.g. CHG cytosine) and in gene silencing. |
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.2001 · DOI: 10.1126/science.1059745 Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene.2001 · DOI: 10.1101/gad.905701
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os10g0104900 |
Involved in CpXpG DNA methylation. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006346 | DNA methylation-dependent constitutive heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010069 | zygote asymmetric cytokinesis in embryo sac | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032259 | methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044027 | negative regulation of gene expression via chromosomal CpG island methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141010 | transposable element silencing by siRNA-mediated DNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031625 | ubiquitin protein ligase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051719 | DNA (cytosine-5-)-methyltransferase activity, acting on CpN substrates | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051720 | DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substrates | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G69770 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.591; coverage=101.499; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os10g0104900 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.966; coverage=93.772; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:542060 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.287; coverage=90.542; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |