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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_009688
Query referenceOH1004
LocationChr02:131253824-131255394 (-)
DescriptionSimilar to At2g17033: Pentatricopeptide repeat-containing protein At2g17033 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009688 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 7 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17033 Pentatricopeptide repeat-containing protein At2g17033. No verified direct reference in this release
At2g31400 Involved in nuclear gene expression via the retrograde plastid-to-nucleus signaling.
Signals from chloroplasts converge to regulate nuclear gene expression.2007 · PMID: 17395793
Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1.2009 · DOI: 10.1111/j.1469-8137.2008.02729.x
The Arabidopsis plastid-signalling mutant gun1 (genomes uncoupled1) shows altered sensitivity to sucrose and abscisic acid and alterations in early seedling development.2010 · DOI: 10.1093/jxb/erq186
Timing the switch to phototrophic growth: a possible role of GUN1.2011 · DOI: 10.4161/psb.6.4.14900
At1g18900 Pentatricopeptide repeat-containing protein At1g18900. No verified direct reference in this release
At1g74750 Pentatricopeptide repeat-containing protein At1g74750. No verified direct reference in this release
At5g12100 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0010019chloroplast-nucleus signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.2; coverage=87.939; evalue=1.13e-10; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031930mitochondria-nucleus signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.2; coverage=87.939; evalue=1.13e-10; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.814; coverage=89.474; evalue=1.7e-10; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.804; coverage=91.667; evalue=7.15e-140; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.2; coverage=87.939; evalue=1.13e-10; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.804; coverage=91.667; evalue=7.15e-140; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.201; coverage=32.675; evalue=1.39e-06; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G18900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=21.814; coverage=89.474; evalue=1.7e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G74750KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=20.723; coverage=91.009; evalue=1.49e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G17033KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.804; coverage=91.667; evalue=7.15e-140UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G31400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=20.2; coverage=87.939; evalue=1.13e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G12100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.201; coverage=32.675; evalue=1.39e-06UniProtKB/Swiss-Prot DAT 2026 current_release