Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_009607`
Query reference	OH1004
Location	Chr02:129578136-129581011 (+)
Description	Similar to PTAC2: Pentatricopeptide repeat-containing protein At1g74850%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009607 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 9 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74850`	Involved in plastid gene expression.	pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression.2006 · DOI: 10.1105/tpc.105.036392
`At2g31400`	Involved in nuclear gene expression via the retrograde plastid-to-nucleus signaling.	Signals from chloroplasts converge to regulate nuclear gene expression.2007 · PMID: 17395793 Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1.2009 · DOI: 10.1111/j.1469-8137.2008.02729.x The Arabidopsis plastid-signalling mutant gun1 (genomes uncoupled1) shows altered sensitivity to sucrose and abscisic acid and alterations in early seedling development.2010 · DOI: 10.1093/jxb/erq186 Timing the switch to phototrophic growth: a possible role of GUN1.2011 · DOI: 10.4161/psb.6.4.14900
`At2g18940`	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic.	No verified direct reference in this release
`At5g02860`	Pentatricopeptide repeat-containing protein At5g02860.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0010019	chloroplast-nucleus signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.13; coverage=80.822; evalue=8.81e-77; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031930	mitochondria-nucleus signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.13; coverage=80.822; evalue=8.81e-77; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042793	plastid transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.612; coverage=88.014; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.612; coverage=88.014; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048255	mRNA stabilization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.929; coverage=72.489; evalue=1.82e-73; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.612; coverage=88.014; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042644	chloroplast nucleoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.612; coverage=88.014; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.13; coverage=80.822; evalue=8.81e-77; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.929; coverage=72.489; evalue=1.82e-73; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G74850	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.612; coverage=88.014; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G18940	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.929; coverage=72.489; evalue=1.82e-73	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G31400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.13; coverage=80.822; evalue=8.81e-77	UniProtKB/Swiss-Prot DAT 2026 current_release