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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_009488
Query referenceOH1004
LocationChr02:127289394-127290120 (-)
DescriptionSimilar to NRT3.2: High-affinity nitrate transporter 3.2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009488 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 6 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g24715 Acts as a dual component transporter with NTR2.1.
High-affinity nitrate transport in roots of Arabidopsis depends on expression of the NAR2-like gene AtNRT3.1.2006 · DOI: 10.1104/pp.105.074385
At5g50200 Acts as a dual component transporter with NTR2.1.
High-affinity nitrate transport in roots of Arabidopsis depends on expression of the NAR2-like gene AtNRT3.1.2006 · DOI: 10.1104/pp.105.074385
Characterization of a two-component high-affinity nitrate uptake system in Arabidopsis. Physiology and protein-protein interaction.2006 · DOI: 10.1104/pp.106.085209
Regulation of root nitrate uptake at the NRT2.1 protein level in Arabidopsis thaliana.2007 · DOI: 10.1074/jbc.m700901200
Nitrate signaling and the two component high affinity uptake system in Arabidopsis.2007 · DOI: 10.4161/psb.2.4.3870

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0595900 Acts as a dual component transporter with NTR2.1, NRT2.2 and NRT2.3.
Spatial expression and regulation of rice high-affinity nitrate transporters by nitrogen and carbon status.2011 · DOI: 10.1093/jxb/erq403
Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges.2011 · DOI: 10.1111/j.1365-3040.2011.02335.x
Os04g0480200 Involved in nitrate transport. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009611response to woundingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.899; coverage=101.02; evalue=1.62e-36; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010167response to nitrateBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.195; coverage=86.224; evalue=7.92e-38; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015706nitrate transmembrane transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.899; coverage=101.02; evalue=1.62e-36; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042128nitrate assimilationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.195; coverage=86.224; evalue=7.92e-38; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.195; coverage=86.224; evalue=7.92e-38; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015112nitrate transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.195; coverage=86.224; evalue=7.92e-38; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G24715KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.195; coverage=86.224; evalue=7.92e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G50200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.899; coverage=101.02; evalue=1.62e-36UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0595900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.105; coverage=87.245; evalue=6.71e-34UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0480200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.865; coverage=75.51; evalue=7.28e-28UniProtKB/Swiss-Prot DAT 2026 current_release