Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009119 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:118144887-118149706 (+) |
| Description | Similar to PDS: 15-cis-phytoene desaturase%2C chloroplastic/chromoplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009119 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g14210 |
Converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene with a concomitant isomerization of two neighboring double bonds at the C9 and C9' positions from trans to cis. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009635 | response to herbicide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=78.535; coverage=75.84; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016117 | carotenoid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016120 | carotene biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=IDA:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051289 | protein homotetramerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.245; coverage=75.323; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009509 | chromoplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016166 | phytoene dehydrogenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071949 | FAD binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.245; coverage=75.323; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G14210 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.304; coverage=74.289; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cann:107861625 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=78.535; coverage=75.84; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gmx:547970 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.245; coverage=75.323; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sly:544073 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=78.912; coverage=75.969; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |