Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008790 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:108882371-108886594 (-) |
| Description | Similar to HDA15: Histone deacetylase 15 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008790 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 53 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g18520 |
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). |
PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings.2013 · DOI: 10.1105/tpc.113.109710 MYB96 recruits the HDA15 protein to suppress negative regulators of ABA signaling in Arabidopsis.2019 · DOI: 10.1038/s41467-019-09417-1
|
At5g61060 |
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4) (Probable). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000183 | rDNA heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.85; coverage=65.517; evalue=6.83e-83; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.85; coverage=65.517; evalue=6.83e-83; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009267 | cellular response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009294 | DNA-mediated transformation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009408 | response to heat | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009640 | photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.499; coverage=67.816; evalue=2.01e-81; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030447 | filamentous growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030466 | silent mating-type cassette heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.85; coverage=65.517; evalue=6.83e-83; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031508 | pericentric heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031509 | subtelomeric heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036166 | phenotypic switching | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036170 | filamentous growth of a population of unicellular organisms in response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036177 | filamentous growth of a population of unicellular organisms in response to pH | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036180 | filamentous growth of a population of unicellular organisms in response to biotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042548 | regulation of photosynthesis, light reaction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.499; coverage=67.816; evalue=2.01e-81; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051289 | protein homotetramerization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071469 | cellular response to alkaline pH | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900239 | regulation of phenotypic switching | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900436 | positive regulation of filamentous growth of a population of unicellular organisms in response to starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900445 | positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900743 | positive regulation of filamentous growth of a population of unicellular organisms in response to pH | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IMP:CGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902794 | siRNA-independent facultative heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000306 | positive regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000118 | histone deacetylase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.85; coverage=65.517; evalue=6.83e-83; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005721 | pericentric heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031934 | mating-type region heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033553 | rDNA heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070823 | HDA1 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070824 | SHREC complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140720 | subtelomeric heterochromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990342 | heterochromatin island | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004407 | histone deacetylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031078 | histone H3K14 deacetylase activity, hydrolytic mechanism | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141221 | histone deacetylase activity, hydrolytic mechanism | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G18520 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.857; coverage=91.626; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G61060 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.499; coverage=67.816; evalue=2.01e-81 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cal:CAALFM_CR02050CA | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.148; coverage=66.667; evalue=4.37e-87 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YNL021W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.103; coverage=63.875; evalue=5.14e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2540821 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.85; coverage=65.517; evalue=6.83e-83 | UniProtKB/Swiss-Prot DAT 2026 current_release |