Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008709 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:106593800-106596752 (+) |
| Description | Similar to XCT: Protein XAP5 CIRCADIAN TIMEKEEPER (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008709 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g21150 |
Involved in light regulation of the circadian clock and photomorphogenesis. | No verified direct reference in this release |
At1g77300 |
Histone methyltransferase involved in di and tri-methylation of 'Lys-36' of histone H3 (H3K36me2 and H3K36me3). |
Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36.2005 · DOI: 10.1038/ncb1329 Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.2008 · DOI: 10.1128/mcb.01607-07 The ASH1 HOMOLOG 2 (ASHH2) histone H3 methyltransferase is required for ovule and anther development in Arabidopsis.2009 · DOI: 10.1371/journal.pone.0007817
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os09g0535300 |
Involved in light regulation of the circadian clock and photomorphogenesis. | No verified direct reference in this release |
UniProt: B8BDW1 |
Involved in light regulation of the circadian clock and photomorphogenesis. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.419; coverage=71.667; evalue=7e-76; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006355 | regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009637 | response to blue light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009873 | ethylene-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009910 | negative regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010099 | regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010223 | secondary shoot formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010363 | regulation of plant-type hypersensitive response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016116 | carotenoid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032259 | methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035196 | miRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042752 | regulation of circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043067 | regulation of programmed cell death | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048511 | rhythmic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.419; coverage=71.667; evalue=7e-76; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048653 | anther development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090548 | response to nitrate starvation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000775 | chromosome, centromeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.419; coverage=71.667; evalue=7e-76; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032183 | SUMO binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042800 | histone H3K4 methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G77300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.688; coverage=21.333; evalue=6.65e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G21150 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.689; coverage=73.0; evalue=2.27e-69 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os09g0535300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.419; coverage=71.667; evalue=7e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dpo:4801527 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.5; coverage=53.333; evalue=2.04e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release |