Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_006741 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:23818242-23821201 (-) |
| Description | Similar to NRAMP3: Metal transporter Nramp3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_006741 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 36 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g23150 |
Vacuolar metal transporter involved in intracellular metal homeostasis. |
Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes.2000 · DOI: 10.1073/pnas.97.9.4991 AtNRAMP3, a multispecific vacuolar metal transporter involved in plant responses to iron deficiency.2003 · DOI: 10.1046/j.1365-313x.2003.01760.x Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron.2005 · DOI: 10.1038/sj.emboj.7600864
|
At5g67330 |
Vacuolar metal transporter involved in intracellular metal homeostasis. |
Cadmium and iron transport by members of a plant metal transporter family in Arabidopsis with homology to Nramp genes.2000 · DOI: 10.1073/pnas.97.9.4991
|
At1g47240 |
Seems to be involved in iron uptake. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006826 | iron ion transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006828 | manganese ion transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006879 | intracellular iron ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009617 | response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009624 | response to nematode | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.856; coverage=99.405; evalue=0.0; UniProt GO evidence=HEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010015 | root morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010039 | response to iron ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.856; coverage=99.405; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010043 | response to zinc ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015691 | cadmium ion transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015692 | lead ion transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030001 | metal ion transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=TAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030003 | intracellular monoatomic cation homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=NAS:TIGR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030026 | intracellular manganese ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034755 | iron ion transmembrane transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048767 | root hair elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051512 | positive regulation of unidimensional cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060586 | multicellular organismal-level iron ion homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071287 | cellular response to manganese ion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071421 | manganese ion transmembrane transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903335 | regulation of vacuolar transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000379 | positive regulation of reactive oxygen species metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005773 | vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005774 | vacuolar membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005802 | trans-Golgi network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.856; coverage=99.405; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009705 | plant-type vacuole membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032588 | trans-Golgi network membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=74.645; coverage=97.817; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005384 | manganese ion transmembrane transporter activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046873 | metal ion transmembrane transporter activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.23; coverage=96.825; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G47240 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=74.214; coverage=94.643; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT2G23150 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.891; coverage=94.643; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G67330 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.856; coverage=99.405; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pop:18101156 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=74.645; coverage=97.817; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |