Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_006479 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:12016313-12020628 (+) |
| Description | Similar to MADS2: Agamous-like MADS-box protein MADS2 (Vitis vinifera OX%3D29760) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_006479 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g02310 |
Probable transcription factor. | No verified direct reference in this release |
At5g15800 |
Probable transcription factor. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.639; coverage=77.74; evalue=2.09e-95; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.066; coverage=78.425; evalue=1.07e-97; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048440 | carpel development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048481 | plant ovule development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.066; coverage=78.425; evalue=1.07e-97; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003700 | DNA-binding transcription factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.066; coverage=78.425; evalue=1.07e-97; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046983 | protein dimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G02310 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.066; coverage=78.425; evalue=1.07e-97 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G15800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.639; coverage=77.74; evalue=2.09e-95 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | vvi:100232867 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.142; coverage=77.397; evalue=5.79e-107 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | vvi:100232869 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.351; coverage=78.082; evalue=1.58e-94 | UniProtKB/Swiss-Prot DAT 2026 current_release |