Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005935 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:175906017-175908616 (+) |
| Description | Similar to ELP4: Elongator complex protein 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005935 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g11220 |
Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine) (By similarity). |
The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth.2005 · DOI: 10.1073/pnas.0502600102 Cytological investigations of the Arabidopsis thaliana elo1 mutant give new insights into leaf lateral growth and Elongator function.2007 · DOI: 10.1093/aob/mcm102
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002098 | tRNA wobble uridine modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.556; coverage=98.901; evalue=1.33e-24; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009734 | auxin-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009738 | abscisic acid-activated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010928 | regulation of auxin mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031538 | negative regulation of anthocyanin metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035265 | organ growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043609 | regulation of carbon utilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071329 | cellular response to sucrose stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000024 | regulation of leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.963; coverage=104.945; evalue=3.17e-23; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008023 | transcription elongation factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.556; coverage=98.901; evalue=1.33e-24; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033588 | elongator holoenzyme complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008607 | phosphorylase kinase regulator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.963; coverage=104.945; evalue=3.17e-23; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G11220 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.192; coverage=100.275; evalue=3.48e-147 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:614139 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.0; coverage=91.209; evalue=2.29e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0278783 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.566; coverage=95.055; evalue=1.11e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:77766 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.963; coverage=104.945; evalue=3.17e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:495207 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.556; coverage=98.901; evalue=1.33e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release |