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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_005608
Query referenceOH1004
LocationChr01:169180536-169182556 (+)
DescriptionSimilar to Os01g0513800: Ribosome production factor 2 homolog (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005608 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23620 Ribosome production factor 2 homolog. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0513800 Ribosome production factor 2 homolog. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000027ribosomal large subunit assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Biological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006364rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.687; coverage=86.589; evalue=9.47e-150; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042273ribosomal large subunit biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902570protein localization to nucleolusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.687; coverage=86.589; evalue=9.47e-150; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISO:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.013; coverage=90.087; evalue=1.4e-67; UniProt GO evidence=HDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00080975S rRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019843rRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G23620KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.687; coverage=86.589; evalue=9.47e-150UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbta:511294KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.087; coverage=90.671; evalue=3.05e-67UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0513800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:84154KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.013; coverage=90.087; evalue=1.4e-67UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:67239KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71UniProtKB/Swiss-Prot DAT 2026 current_release