Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005576 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:168618493-168621187 (+) |
| Description | Similar to EBS: Chromatin remodeling protein EBS (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005576 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 18 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g11560 |
Transcriptional repressor. |
A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis .2017 · DOI: 10.1073/pnas.1710683114
|
At4g22140 |
Chromatin remodeling factor that binds to methylated histone (e.g. H3K4me2/3) to prevent their acetylation (e.g. H3K9K14Ac), likely by recruiting histone deacetylase (HDAC) complexes, and thus regulating the transcription of target genes. | No verified direct reference in this release |
At4g04260 |
Chromatin remodeling factor that binds to methylated histone (e.g. H3K4me2/3) to prevent their acetylation (e.g. H3K9K14Ac), likely by recruiting histone deacetylase (HDAC) complexes, and thus regulate the transcription of target genes. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009791 | post-embryonic development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010220 | positive regulation of vernalization response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.179; coverage=86.356; evalue=4.34e-177; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034244 | negative regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048579 | negative regulation of long-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000028 | regulation of photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000976 | transcription cis-regulatory region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001217 | DNA-binding transcription repressor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061628 | histone H3K27me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140002 | histone H3K4me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140566 | histone reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.991; coverage=97.338; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140678 | molecular function inhibitor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07; UniProt GO evidence=IMP:DisProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G04260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.047; coverage=14.309; evalue=1.74e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G22140 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.78; coverage=18.136; evalue=1.07e-07 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bdi:100843157 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.179; coverage=86.356; evalue=4.34e-177 | UniProtKB/Swiss-Prot DAT 2026 current_release |