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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_001866
Query referenceOH1004
LocationChr01:35350841-35353991 (+)
DescriptionSimilar to NPF6.4: Protein NRT1/ PTR FAMILY 6.4 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001866 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 28 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g21670 Low-affinity nitrate transporter. No verified direct reference in this release
At1g12110 Dual affinity nitrate transporter.
CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake.1999 · DOI: 10.1105/tpc.11.5.865
The nitrate transporter AtNRT1.1 (CHL1) functions in stomatal opening and contributes to drought susceptibility in Arabidopsis.2003 · DOI: 10.1105/tpc.006312
Switching between the two action modes of the dual-affinity nitrate transporter CHL1 by phosphorylation.2003 · DOI: 10.1093/emboj/cdg118
Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1.2004 · DOI: 10.1105/tpc.104.024380
The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches.2006 · DOI: 10.1073/pnas.0605275103
A genetic screen for nitrate regulatory mutants captures the nitrate transporter gene NRT1.1.2009 · DOI: 10.1104/pp.109.140434
Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.2010 · DOI: 10.1016/j.devcel.2010.05.008
The herbicide sensitivity gene CHL1 of Arabidopsis encodes a nitrate-inducible nitrate transporter.1993 · DOI: 10.1016/0092-8674(93)90399-b
The Arabidopsis CHL1 protein plays a major role in high-affinity nitrate uptake.1998 · DOI: 10.1073/pnas.95.25.15134
At2g26690 Low-affinity proton-dependent nitrate transporter. No verified direct reference in this release
At3g54140 Peptide transporter.
AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x
AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
At5g01180 Peptide transporter.
AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006857oligopeptide transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009611response to woundingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.339; coverage=99.086; evalue=5.3e-159; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009635response to herbicideBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009753response to jasmonic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.339; coverage=99.086; evalue=5.3e-159; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009860pollen tube growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=102.377; evalue=6.47e-132; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010167response to nitrateBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010540basipetal auxin transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015706nitrate transmembrane transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042128nitrate assimilationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042938dipeptide transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042939tripeptide transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048527lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0055085transmembrane transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.339; coverage=99.086; evalue=5.3e-159; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015112nitrate transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015293symporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0022857transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.339; coverage=99.086; evalue=5.3e-159; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042937tripeptide transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071916dipeptide transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G12110KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.167; coverage=104.022; evalue=9.47e-163UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G26690KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.339; coverage=99.086; evalue=5.3e-159UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G21670KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.071; coverage=102.377; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G54140KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.82; coverage=101.463; evalue=1.42e-137UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G01180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=102.377; evalue=6.47e-132UniProtKB/Swiss-Prot DAT 2026 current_release