RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_001648
Query referenceOH1004
LocationChr01:30754607-30757115 (+)
DescriptionSimilar to OTP51: Pentatricopeptide repeat-containing protein At2g15820%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001648 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 10 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g15820 Promotes the splicing of group II introns in chloroplasts.
The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03581.x
At2g17140 Pentatricopeptide repeat-containing protein At2g17140. No verified direct reference in this release
At2g15630 Pentatricopeptide repeat-containing protein At2g15630, mitochondrial. No verified direct reference in this release
At1g09680 Putative pentatricopeptide repeat-containing protein At1g09680. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0702000 Promotes the splicing of group II introns in chloroplasts.
A mutation of OSOTP 51 leads to impairment of photosystem I complex assembly and serious photo-damage in rice.2012 · DOI: 10.1111/j.1744-7909.2012.01094.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000373Group II intron splicingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006388tRNA splicing, via endonucleolytic cleavage and ligationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010239chloroplast mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045292mRNA cis splicing, via spliceosomeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048564photosystem I assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=23.824; coverage=43.257; evalue=1.97e-14; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=23.824; coverage=43.257; evalue=1.97e-14; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004519endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G15630KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=22.782; coverage=53.053; evalue=2.12e-14UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G15820KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.152; coverage=100.509; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G17140KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=23.824; coverage=43.257; evalue=1.97e-14UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0702000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.0; coverage=85.878; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release