Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_001458`
Query reference	OH1004
Location	Chr01:27168339-27170553 (+)
Description	Similar to RCF3: RNA-binding KH domain-containing protein RCF3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001458 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53060`	Acts as a negative regulator of osmotic stress-induced gene expression.	HOS5-a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana.1999 · DOI: 10.1046/j.1365-313x.1999.00558.x A KH domain-containing putative RNA-binding protein is critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.2013 · DOI: 10.1093/mp/sss119 The arabidopsis RNA binding protein with K homology motifs, SHINY1, interacts with the C-terminal domain phosphatase-like 1 (CPL1) to repress stress-inducible gene expression.2013 · DOI: 10.1371/journal.pgen.1003625 A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003875 The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress.2015 · DOI: 10.1371/journal.pone.0126978 The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis.2015 · DOI: 10.1093/nar/gkv751 KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1.2015 · DOI: 10.1073/pnas.1512865112
`At5g64390`	Functions in floral reproductive organ identity in the third whorl and floral determinacy specification by specifically promoting the processing of AGAMOUS (AG) pre-mRNA.	No verified direct reference in this release
`At4g18375`	KH domain-containing protein At4g18375.	No verified direct reference in this release
`At4g26000`	Regulates vegetative and gynoecium development.	No verified direct reference in this release
`At3g04610`	Positively regulates flowering by repressing FLC expression and post-transcriptional modification.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006396	RNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008380	RNA splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009867	jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009911	positive regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.093; coverage=34.155; evalue=4.66e-47; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010093	specification of floral organ identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.093; coverage=34.155; evalue=4.66e-47; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010286	heat acclimation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010468	regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.093; coverage=34.155; evalue=4.66e-47; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031053	primary miRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048497	maintenance of floral organ identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.093; coverage=34.155; evalue=4.66e-47; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900150	regulation of defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010445	nuclear dicing body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.093; coverage=34.155; evalue=4.66e-47; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070878	primary miRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G53060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.618; coverage=107.042; evalue=5.66e-65	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G64390	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.093; coverage=34.155; evalue=4.66e-47	UniProtKB/Swiss-Prot DAT 2026 current_release