Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_000523`
Query reference	OH1004
Location	Chr01:9798854-9800796 (-)
Description	Similar to MBD7: Methyl-CpG-binding domain-containing protein 7 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000523 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59800`	Transcriptional regulator that binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides.	Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins.2003 · DOI: 10.1046/j.1365-313x.2003.01756.x The three methyl-CpG-binding domains of AtMBD7 control its subnuclear localization and mobility.2008 · DOI: 10.1074/jbc.m706221200 Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis.2015 · DOI: 10.1104/pp.114.252106 The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing.2015 · DOI: 10.1016/j.molcel.2015.01.009
`At5g59380`	Transcriptional regulator that binds CpG, CpNpN and CpNpG (N is A, T, or C) islands in promoters regardless the DNA methylation status.	Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins.2003 · DOI: 10.1046/j.1365-313x.2003.01756.x Arabidopsis MBD proteins show different binding specificities and nuclear localization.2003 · DOI: 10.1023/b:plan.0000019118.56822.a9 Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins.2008 · DOI: 10.1016/j.molcel.2008.11.009 AtMBD6, a methyl CpG binding domain protein, maintains gene silencing in Arabidopsis by interacting with RNA binding proteins.2017 · DOI: 10.1007/s12038-016-9658-1
`At3g46580`	Transcriptional regulator that binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides.	Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins.2003 · DOI: 10.1046/j.1365-313x.2003.01756.x Methylated DNA-binding proteins from Arabidopsis.2003 · DOI: 10.1104/pp.103.026708 Arabidopsis MBD proteins show different binding specificities and nuclear localization.2003 · DOI: 10.1023/b:plan.0000019118.56822.a9

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031047	regulatory ncRNA-mediated gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.834; coverage=45.278; evalue=5.13e-11; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000792	heterochromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.834; coverage=45.278; evalue=5.13e-11; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005694	chromosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005731	nucleolus organizer region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.834; coverage=45.278; evalue=5.13e-11; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.834; coverage=45.278; evalue=5.13e-11; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010369	chromocenter	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010370	perinucleolar chromocenter	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.834; coverage=45.278; evalue=5.13e-11; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008327	methyl-CpG binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019899	enzyme binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G46580	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.326; coverage=47.778; evalue=3.69e-09	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G59380	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=28.834; coverage=45.278; evalue=5.13e-11	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G59800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=28.086; coverage=90.0; evalue=2.26e-21	UniProtKB/Swiss-Prot DAT 2026 current_release