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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000359
Query referenceOH1004
LocationChr01:6589973-6592432 (-)
DescriptionSimilar to TFIIB2: Transcription initiation factor IIB-2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000359 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10330 General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II. No verified direct reference in this release
At2g41630 General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II (By similarity).
The Arabidopsis general transcription factor TFIIB1 (AtTFIIB1) is required for pollen tube growth and endosperm development.2013 · DOI: 10.1093/jxb/ert078

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0534800 General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II.
Rice TATA binding protein interacts functionally with transcription factor IIB and the RF2a bZIP transcriptional activator in an enhanced plant in vitro transcription system.2002 · DOI: 10.1105/tpc.010364

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001174transcriptional start site selection at RNA polymerase II promoterBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.986; coverage=94.872; evalue=5.55e-85; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006352DNA-templated transcription initiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006367transcription initiation at RNA polymerase II promoterBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.986; coverage=94.872; evalue=5.55e-85; UniProt GO evidence=ISS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=82.051; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010183pollen tube guidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=82.051; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042789mRNA transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.986; coverage=94.872; evalue=5.55e-85; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051123RNA polymerase II preinitiation complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.986; coverage=94.872; evalue=5.55e-85; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070897transcription preinitiation complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080092regulation of pollen tube growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=82.051; coverage=100.0; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0097550transcription preinitiation complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016251RNA polymerase II general transcription initiation factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017025TBP-class protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061733protein-lysine-acetyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.986; coverage=94.872; evalue=5.55e-85; UniProt GO evidence=ISS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G41630KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=82.051; coverage=100.0; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G10330KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=90.385; coverage=100.0; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdme:Dmel_CG5193KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.986; coverage=94.872; evalue=5.55e-85UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGgmx:548070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.818; coverage=100.321; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release